The Methodist Hospital System
The Methodist Hospital System. Leading Medicine

2009 Journals

Systems Medicine and Bioengineering - 2009 Journals

Bioinformatics and Systems Biology
Tianming Liu, Hanchuan Peng, Xiaobo Zhou
Imaging informatics for personalised medicine: applications and challenges.
I. J. Functional Informatics and Personalised Medicine 2(2): 125-135, 2009. Pubmed ID: 19862353
 
Bo Geng, Xiaobo Zhou, Y. S. Hung
Growing enzyme gene networks by integration of gene expression, motif sequence, and metabolic information. Pattern Recognition 42(4): 557-561 (2009).
 
Zhang S, Degraba TJ, Wang H, Hoehn GT, Gonzales DA, Suffredini AF, Ching WK, Ng MK, Zhou X, Wong ST.
A novel peak detection approach with chemical noise removal using short-time FFT for prOTOF MS data. Proteomics. 2009 Aug 13;9(15):3833-3842. [Epub ahead of print]. Pubmed ID: 19681055
 
Chang CC, Zhou X, Taylor JJ, Huang WT, Ren X, Monzon F, Feng Y, Rao PH, Lu XY, Fabio F, Hilsenbeck S, Creighton CJ, Jaffe ES, Lau CC.
Genomic profiling of plasmablastic lymphoma using array comparative genomic hybridization (aCGH): revealing significant overlapping genomic lesions with diffuse large B-cell lymphoma.
J Hematol Oncol. 2009 Nov 12;2:47. Pubmed ID: 19909553
 
Jin G, Zhou X, Cui K, Zhang XS, Chen L, Wong ST.
A cross-platform method for identifying candidate network biomarkers for prostate cancer.
IET Systems Biology, 2009 Nov;3(6):505. Pubmed ID: 19947776
 
G Jin, K.Cui, X. Zhou, Wong ST.
Unraveling the signal-transduction networks in cancer metastasis.
IEEE Signal Processing Magazine, Volume 26, Issue 5, September 2009 Page(s):129 - 132.
 
Fan J, Zhou X, Dy JG, Zhang Y, Wong ST.
An Automated Pipeline for Dendrite Spine Detection and Tracking of 3D Optical Microscopy Neuron Images of In Vivo Mouse Models. Neuroinformatics. 2009 Jun;7(2):113-30. Pubmed ID: 19434521
 
Zhou X, Wang H, Wang J, Wang Y, Hoehn G, Azok J, Brennan ML, Hazen SL, Li K, Chang SF, Wong ST.
Identification of biomarkers for risk stratification of cardiovascular events using genetic algorithm with recursive local floating search. Proteomics. 2009 Apr;9(8):2286-94. Pubmed ID: 19337989
 
Donggang Yu, Tuan D. Pham, Xiaobo Zhou, Stephen T. C. Wong
Recognition and analysis of cell nuclear phases for high-content screening based on morphological features. Pattern Recognition 42(4): 498-508 (2009).
 
Yin Z, Zhou X, Sun Y, Wong ST.
Online phenotype discovery based on minimum classification error model.
Pattern Recognition. 2009 Apr; 42(4): 509-522. Pubmed ID: 20161245
 
Zhou X, Li F, Yan J, Wong ST.
A novel cell segmentation method and cell phase identification using Markov model. IEEE Trans Inf Technol Biomed. 2009 Mar;13(2):152-7. Pubmed ID: 19272857
 
Wang J, Zhou X, Li F, Bradley PL, Chang SF, Perrimon N, Wong ST.
An image score inference system for RNAi genome-wide screening based on fuzzy mixture regression modeling J Biomed Inform. 2009 Feb;42(1):32-40. Pubmed ID: 18547870
 
Firdaus Janoos,Kishore Mosaliganti, Xiaoyin Xu,Raghu Machiraju, Kun Huang,Stephen T.C. Wong.
Robust 3D Reconstruction and Identification of Dendritic Spines from Optical Microscopy Imaging Med Image Anal. 2009 Feb;13(1):167-79. Pubmed ID: 18819835
 
Kamali M, Day LJ, Brooks DH, Zhou XB, and O’Malley DM .
Automated Identification of Neurons in 3D Confocal Datasets from Zebrafish Brainstem. Journal of Microscopy, 2009 Jan;233(1):114-31. Pubmed ID: 19196418
 
Wu LY, Zhou X, Li F, Yang X, Chang CC, Wong ST.
Conditional Random Pattern Algorithm for LOH Inference and Segmentation. Bioinformatics Vol. 25, No. 1, 61-67, 2009. Pubmed ID: 18974074
 
Srinivasan R, Zhou X, Miller E, Lu J, Litchman J, Wong ST.
Automated axon tracking of 3D confocal laser scanning microscopy images using guided probabilistic region merging. Neuroinformatics: Volume 7, Issue 1 (2009), Page 8. Pubmed ID: 17917130
 
Huang WT, Yang X, Zhou X, and Chang CC.
Multiple distinct clones may co-exist in different lineages in myelodysplastic syndromes. Leukemia Research, 33(6):847-853, 2009. Pubmed ID: 19084271
 
Xiaorong Yang, Xiaobo Zhou, Wan-Ting Huang, Lingyun Wu, Federico A. Monzon, Chung-Che Chang and Stephen T.C. Wong.
Pattern-selection Based Power Analysis and Discrimination of Low- and High-Grade Myelodysplastic Syndromes Study Using SNP Arrays. Plos One, 4(4):e5054, 2009. Pubmed ID: 19352488
 

Biotechnologies and Drug Development
Hong Zhao, Jinmin Zhu, Kemi Cui, Xiaoyin Xu, Megan O'Brien, Kelvin K Wong, Santosh Kesari, Weiming Xia and Stephen TC Wong.
Bioluminescence Imaging Reveals Inhibition of Tumor Cell Proliferation by Alzheimer's Amyloid beta Protein. Cancer Cell Int. 2009 Jun 1;9:15 . Pubmed ID: 19480719
 
Zhao H, Tang C, Cui K, Ang BT, Wong ST.
A screening platform for glioma growth and invasion using bioluminescence imaging. J Neurosurg. 2009 Aug;111(2):238-46. Pubmed ID: 19199503
 
Dominik Beck and Stephen Wong.
Current Highlights in Nanomedicine from Engineering and Biomedical perspectives. Journal of Nanomedicine 2009 Jul;4(5):515-7.
 
Aysen Tulpar, Zhiyong Wang, Chang-Hyun Jang, Vaibhav Jain, James R Heflin and William A Ducker.
Nanoscale patterning of ionic self-assembled multilayers. Nanotechnology, 20, 155301, 2009. Pubmed ID: 19420543
 
Wang Y, Cui K, Zhao H, Li D, Wang W, Zhu Y.
Bushen Ningxin Decoction pharmacological serum promotes the proliferation and suppresses the apoptosis of murine osteoblasts through MAPK pathway.
J Ethnopharmacol. 2009 Mar 18;122(2):221-6. Pubmed ID: 19330912
 

Medical Imaging, Biophotonics, and Image-Guided Therapy
Jeyarama S. Ananta, Michael L. Matson, Annie M. Tang, Trinanjana Mandal, Stephen Lin, Kelvin Wong, Stephen T. Wong and Lon J. Wilson
Single-Walled Carbon Nanotube Materials as T2-Weighted MRI Contrast Agents. J. Phys. Chem. C, 2009, 113 (45), pp 19369-19372.
 
Zhiyong Wang, J. R. Heflin, Kevin Vancott, Rogers H. Stolen, Siddharth Ramachandran and Samir Ghalmi.
Biosensors Employing Ionic Self-Assembled Multilayers Adsorbed on Long Period Fiber Gratings. Sensors & Actuators: B. Chemical, 139, pp.618–623, 2009.
 
Fu JH, Wong K, Mok V, Hu X, Xiong Y, Chen Y, Tang WK, Chen X, Wong A, Chu W, Wong KS, Wong S.
Neuroimaging predictors for depressive symptoms in cerebral small vessel disease. International Journal of Geriatric Psychiatry. Int J Geriatr Psychiatry. 2009 Nov 27. Pubmed ID: 19946871
 
Kwong KK, Kloetzer L, Wong KK, Ren JQ, Kuo B, Jiang Y, Chen YI, Chan ST, Young GS, Wong ST.
Bioluminescence Imaging of Heme Oxygenase-1 Upregulation in the Gua Sha Procedure. J Vis Exp. 2009 Aug 28;(30). pii: 1385. doi: 10.3791/1385. Pubmed ID: 19718012
 
Zhiyong Wang and Hai Xiao.
Optical Intensity-Based Long-Period Fiber Grating Biosensors and Biomedical Applications. IEEE Signal Processing Magazine, pp.121-127, March 2009.
 
Wong KK, Tam CP, Ng M, Wong ST, Young GS.
Improved residue function and reduced flow dependence in MR perfusion using least-absolute-deviation regularization Magn Reson Med. 2009 Jan 22;61(2):418-428. Pubmed ID: 19161133
 
Zhong Xue, Dinggang Shen.
A new statistically-constrained deformable registration framework for MR brain images. Int. J. Medical Engineering and Informatics, Vol. 1, No. 3, 2009 , pp 357-367. Pubmed ID: 20011232
 
Wong STC.
Introduction to the special issue of "Advances in Molecular Imaging. European Journal of Radiology 70 (2009) 199-200. Pubmed ID: 19261413
 
Jingxin Nie, Zhong Xue, Tianming Liu, Geoffrey Young, Kian Setayesh, Lei Guo, Stephen TC Wong.
Automated Brain Tumor Segmentation Using Spatial Accuracy-Weighted Hidden Markov Random Field. Comput Med Imaging Graph. 2009 Sep;33(6):431-41. Pubmed ID: 19446435